{
  "_id": "6a61d012768d0b54cfc78df8",
  "Package": "countdata",
  "Type": "Package",
  "Title": "The Beta-Binomial Test for Count Data",
  "Version": "1.3",
  "Date": "2023-03-09",
  "Authors@R": "c(person(\"Thang\", \"Pham\", email = \"t.pham@amsterdamumc.nl\",\nrole = c(\"aut\", \"cre\", \"cph\", \"ctb\"),\ncomment = c(ORCID = \"0000-0003-0333-2492\")))",
  "Maintainer": "Thang Pham <t.pham@amsterdamumc.nl>",
  "Description": "The beta-binomial test is used for significance analysis\nof independent samples by Pham et al. (2010)\n<doi:10.1093/bioinformatics/btp677>. The inverted beta-binomial\ntest is used for paired sample testing, e.g. pre-treatment and\npost-treatment data, by Pham and Jimenez (2012)\n<doi:10.1093/bioinformatics/bts394>.",
  "License": "BSD_3_clause + file LICENSE",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-23 08:06:13 UTC",
    "User": "root"
  },
  "Author": "Thang Pham [aut, cre, cph, ctb]\n(<https://orcid.org/0000-0003-0333-2492>)",
  "Repository": "https://tvpham.r-universe.dev",
  "Date/Publication": "2023-03-09 10:10:02 UTC",
  "RemoteUrl": "https://github.com/cran/countdata",
  "RemoteRef": "HEAD",
  "RemoteSha": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
  "_user": "tvpham",
  "_type": "src",
  "_file": "countdata_1.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/e58774ba83e9009c9f642e3e83fdf70ece238ac69fab64e45c951cd8b22b4c07",
  "_filesize": 711490,
  "_sha256": "e58774ba83e9009c9f642e3e83fdf70ece238ac69fab64e45c951cd8b22b4c07",
  "_expires": "2026-10-31T08:25:52.000Z",
  "_created": "2026-07-23T08:06:13.000Z",
  "_published": "2026-07-23T08:25:54.097Z",
  "_jobs": [
    {
      "job": 89151085313,
      "time": 107,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8556767541"
    },
    {
      "job": 89151085294,
      "time": 112,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8556769616"
    },
    {
      "job": 89151085335,
      "time": 118,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8556771187"
    },
    {
      "job": 89151085285,
      "time": 114,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8556770168"
    },
    {
      "job": 89151085268,
      "time": 68,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8556754567"
    },
    {
      "job": 89151085291,
      "time": 162,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8556786054"
    },
    {
      "job": 89151085262,
      "time": 81,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8556758669"
    },
    {
      "job": 89151085245,
      "time": 138,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8556778365"
    },
    {
      "job": 89150648090,
      "time": 162,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8556730961"
    },
    {
      "job": 89151085264,
      "time": 91,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8556762754"
    },
    {
      "job": 89151085303,
      "time": 84,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8556759955"
    },
    {
      "job": 89151085288,
      "time": 84,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8556759961"
    },
    {
      "job": 89151085281,
      "time": 95,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8556763410"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479",
  "_status": "success",
  "_upstream": "https://github.com/cran/countdata",
  "_commit": {
    "id": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
    "author": "Thang Pham <t.pham@amsterdamumc.nl>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.3\n",
    "time": 1678356602
  },
  "_maintainer": {
    "name": "Thang Pham",
    "email": "t.pham@amsterdamumc.nl",
    "login": "tvpham",
    "orcid": "0000-0003-0333-2492",
    "description": "",
    "uuid": 4885731
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "tvpham",
      "count": 3,
      "uuid": 4885731
    }
  ],
  "_userbio": {
    "uuid": 4885731,
    "type": "user",
    "name": "Thang Pham",
    "followers": 8
  },
  "_downloads": {
    "count": 285,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/countdata"
  },
  "_searchresults": 10,
  "_topics": [
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/countdata.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_realowner": "tvpham",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.1",
      "date": "2021-01-27"
    },
    {
      "version": "1.2",
      "date": "2021-09-14"
    },
    {
      "version": "1.3",
      "date": "2023-03-09"
    }
  ],
  "_exports": [
    "bb.test",
    "fold.change",
    "ibb.test",
    "normalize"
  ],
  "_help": [
    {
      "page": "bb.test",
      "title": "The beta-binomial test",
      "topics": [
        "bb.test"
      ]
    },
    {
      "page": "fold.change",
      "title": "Fold change calculation",
      "topics": [
        "fold.change"
      ]
    },
    {
      "page": "ibb.test",
      "title": "The inverted beta-binomial test",
      "topics": [
        "ibb.test"
      ]
    },
    {
      "page": "normalize",
      "title": "Global normalization of count data",
      "topics": [
        "normalize"
      ]
    }
  ],
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "countdata.Rmd",
      "filename": "countdata.html",
      "title": "The Beta-Binomial Test for Count Data",
      "author": "Thang V Pham",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Quick start",
        "Unpaired test",
        "Data normalization",
        "Fold change calculation",
        "Paired test",
        "References"
      ],
      "created": "2021-01-27 09:00:04",
      "modified": "2021-09-14 18:30:02",
      "commits": 2
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "countdata",
  "_universes": [
    "tvpham"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-07-23T08:08:09.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/fd18de462c93d58a036f0ca8f51d6406f0272c7e6558d60825c10ce60a5204dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-07-23T08:08:13.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/f317fcd06c7cbe68ec95dd9ca3e29f0d08ba06853c122a57ef5b254bd81be385",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3",
      "date": "2026-07-23T08:08:19.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/9f6682c1157e40ec44907915766e47ebf971c7a6973e62bd78a989c0c3d7c512",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3",
      "date": "2026-07-23T08:08:14.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/1dd5094798b1a1bbeb7c6d5e4471c9a116fa5c6a0ffad242b682d5c48fee4045",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3",
      "date": "2026-07-23T08:07:32.000Z",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/7a19d61854c345770b33e4a821758b4d95004f959e77947960e15f3273eabfd9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3",
      "date": "2026-07-23T08:08:55.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/76a7e7320509e22c73bd85826034ec9270958186caeb40a4cecae81eadea6c29",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.3",
      "date": "2026-07-23T08:07:42.000Z",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/ce58ddbf5cf27b96f6f631db4051adfcfd1017ebdb038d32aaa58efa80b626e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.3",
      "date": "2026-07-23T08:08:32.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/f26cfaca355ea3fba0c41a9432e91f9a1f4b98bdabddf35319c4dd6119cef64b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3",
      "date": "2026-07-23T08:08:04.000Z",
      "arch": "emscripten",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/0b55945b2ce6c18ff9fdcfd6b8a729008b8fc5732b009826811bc822c49a562c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3",
      "date": "2026-07-23T08:07:27.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/c52050e25faf5f72062a5ea8fcb376123b5f2b8790616815aaff2d8aff5a8d60",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3",
      "date": "2026-07-23T08:07:28.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/36c22a3a56bb48b74156a918d9f7d2a200533b6fba96e5c41c82704efe14d6fd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.3",
      "date": "2026-07-23T08:07:23.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "https://r2.ropensci.org/02c223932919fc1adb99279576582bf6e296cc265a9f60ec9f6a5b4a109e612c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/29990062479"
    }
  ]
}