{
  "_id": "6a3a6f38ef5099f0c5f134e9",
  "Package": "countdata",
  "Type": "Package",
  "Title": "The Beta-Binomial Test for Count Data",
  "Version": "1.3",
  "Date": "2023-03-09",
  "Authors@R": "c(person(\"Thang\", \"Pham\", email = \"t.pham@amsterdamumc.nl\",\nrole = c(\"aut\", \"cre\", \"cph\", \"ctb\"),\ncomment = c(ORCID = \"0000-0003-0333-2492\")))",
  "Maintainer": "Thang Pham <t.pham@amsterdamumc.nl>",
  "Description": "The beta-binomial test is used for significance analysis\nof independent samples by Pham et al. (2010)\n<doi:10.1093/bioinformatics/btp677>. The inverted beta-binomial\ntest is used for paired sample testing, e.g. pre-treatment and\npost-treatment data, by Pham and Jimenez (2012)\n<doi:10.1093/bioinformatics/bts394>.",
  "License": "BSD_3_clause + file LICENSE",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-23 11:30:35 UTC",
    "User": "root"
  },
  "Author": "Thang Pham [aut, cre, cph, ctb]\n(<https://orcid.org/0000-0003-0333-2492>)",
  "Repository": "https://tvpham.r-universe.dev",
  "Date/Publication": "2023-03-09 10:10:02 UTC",
  "RemoteUrl": "https://github.com/cran/countdata",
  "RemoteRef": "HEAD",
  "RemoteSha": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
  "MD5sum": "17ae584aef8abe519d6e773a2726d1ae",
  "_user": "tvpham",
  "_type": "src",
  "_file": "countdata_1.3.tar.gz",
  "_fileid": "2be76a847c1beb1c546b71f2b84cc8c251e44c603024ac4f6857eeef67973a54",
  "_filesize": 713254,
  "_sha256": "2be76a847c1beb1c546b71f2b84cc8c251e44c603024ac4f6857eeef67973a54",
  "_created": "2026-06-23T11:30:35.000Z",
  "_published": "2026-06-23T11:34:16.986Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 82943762620,
      "time": 154,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7819551751"
    },
    {
      "job": 82943762576,
      "time": 124,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7819541083"
    },
    {
      "job": 82943762589,
      "time": 149,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7819550309"
    },
    {
      "job": 82943762625,
      "time": 124,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7819541144"
    },
    {
      "job": 82943762610,
      "time": 75,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7819524174"
    },
    {
      "job": 82943762598,
      "time": 187,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7819562435"
    },
    {
      "job": 82943762654,
      "time": 115,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7819537188"
    },
    {
      "job": 82943762614,
      "time": 176,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7819559122"
    },
    {
      "job": 82943327882,
      "time": 146,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7819496148"
    },
    {
      "job": 82943762607,
      "time": 90,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7819529457"
    },
    {
      "job": 82943762664,
      "time": 84,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7819527374"
    },
    {
      "job": 82943762552,
      "time": 84,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7819526907"
    },
    {
      "job": 82943762591,
      "time": 88,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7819529033"
    }
  ],
  "_buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/countdata",
  "_commit": {
    "id": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
    "author": "Thang Pham <t.pham@amsterdamumc.nl>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.3\n",
    "time": 1678356602
  },
  "_maintainer": {
    "name": "Thang Pham",
    "email": "t.pham@amsterdamumc.nl",
    "login": "tvpham",
    "orcid": "0000-0003-0333-2492",
    "description": "",
    "uuid": 4885731
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "tvpham",
      "count": 3,
      "uuid": 4885731
    }
  ],
  "_userbio": {
    "uuid": 4885731,
    "type": "user",
    "name": "Thang Pham",
    "followers": 8
  },
  "_downloads": {
    "count": 294,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/countdata"
  },
  "_searchresults": 10,
  "_topics": [
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/countdata.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_realowner": "tvpham",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.1",
      "date": "2021-01-27"
    },
    {
      "version": "1.2",
      "date": "2021-09-14"
    },
    {
      "version": "1.3",
      "date": "2023-03-09"
    }
  ],
  "_exports": [
    "bb.test",
    "fold.change",
    "ibb.test",
    "normalize"
  ],
  "_help": [
    {
      "page": "bb.test",
      "title": "The beta-binomial test",
      "topics": [
        "bb.test"
      ]
    },
    {
      "page": "fold.change",
      "title": "Fold change calculation",
      "topics": [
        "fold.change"
      ]
    },
    {
      "page": "ibb.test",
      "title": "The inverted beta-binomial test",
      "topics": [
        "ibb.test"
      ]
    },
    {
      "page": "normalize",
      "title": "Global normalization of count data",
      "topics": [
        "normalize"
      ]
    }
  ],
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "countdata.Rmd",
      "filename": "countdata.html",
      "title": "The Beta-Binomial Test for Count Data",
      "author": "Thang V Pham",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Quick start",
        "Unpaired test",
        "Data normalization",
        "Fold change calculation",
        "Paired test",
        "References"
      ],
      "created": "2021-01-27 09:00:04",
      "modified": "2021-09-14 18:30:02",
      "commits": 2
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "countdata",
  "_universes": [
    "tvpham"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-23T11:33:17.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "12eed7f6fb3ec80f6c468430d480b2ddda76869f5e184358848699615e78e44a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-23T11:32:43.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "e3d2e8f9d0e2ffa79b61c3d7c3b2dde2095f67a21a16b237d2cc074876202dc2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-23T11:33:12.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "b973ea5649db5d18ded7f7ac5a889d546fbe7fcad70f4393142f25cd9058c00a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.3",
      "date": "2026-06-23T11:32:42.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "81609c923bed539c4835d5272b93a9b997c9b730ff559c027fd9fdc608e6c046",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-23T11:31:57.000Z",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "d7e7a18b86daaeaaa00e373196f0b992e2f5056e97618f682481613af7717580",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-23T11:33:26.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "4cd53fe8b4ba54860e9204294a73001168b01d7de907485c104bd58131b4d2a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-23T11:32:23.000Z",
      "arch": "aarch64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "df53979b55be2fe4f437eb1077e98aa3757ce028f2031fda1887b1921a8b9335",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.3",
      "date": "2026-06-23T11:33:29.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "962ae71d57d84d4df2cb1ee71ac52b4d16448f5b712bcc5c3affcfec75851495",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3",
      "date": "2026-06-23T11:32:21.000Z",
      "arch": "emscripten",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "34a3aa12f80a481b5d99b82b72a95e450f1e9ad0dd5f89acfe184d42b9511ee8",
      "status": "success",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3",
      "date": "2026-06-23T11:31:46.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "1d3bf9b08b04e13b72dbec9d3a90984852b5f8bc82d72ebb9533782df1cce349",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3",
      "date": "2026-06-23T11:31:48.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "a355ae9f24b3b07c4aff0b0442bc989b1eb0d027c3b985e9559673b8bcfc7535",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.3",
      "date": "2026-06-23T11:31:57.000Z",
      "arch": "x86_64",
      "commit": "6157e6ce4f6e9b5e2a487f328178564efbf65676",
      "fileid": "6def2d30ef6d75732df371c4abdc0bab8d0b8c05403326d99035a0adf2b08d01",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tvpham/actions/runs/28022869826"
    }
  ]
}