Changes in version 2.0.1 (2026-03-21)                  

  - ensure input data is a data frame
  - update citations

                 Changes in version 2.0.0 (2025-10-06)                  

  - support iq format
  - fast algorithms for MaxLFQ, robust linear model, median polish, and
    weighted methods.

                 Changes in version 1.10.1 (2024-12-04)                 

  - add support for processing a data frame in the function
    'process_long_format'.

                 Changes in version 1.9.12 (2023-12-06)                 

  - fix some C++ warnings size_t to int

                 Changes in version 1.9.10 (2023-03-29)                 

  - remove R_forceSymbols

                 Changes in version 1.9.9 (2023-02-27)                  

  - improve C++ related codes: support spaces in column names, revise
    manuals, fix a bug when a protein is filtered out, remove C++11
    requirement in Makevars

                 Changes in version 1.9.7 (2023-01-06)                  

  - fix a bug in extract_annotation (thanks to Luc and AT-LAB, Thuyloi
    University, Vietnam)
  - add two filtering options in fast_read for not equal strings and
    numerical greater than
  - fix typo in vignettes
  - boxplot in fast_preprocess and process_long_format is optional to
    reduce memory usage for very large datasets
  - add an option to count the number of fragments and peptides in
    process_long_format

                 Changes in version 1.9.6 (2022-04-26)                  

  - add support for multiple quantitative values per table cell, for
    examples fragment intensities separated by ';' in DIA-NN output.

  - add oneliner function 'process_long_format' for end-to-end
    processing with default values for DIA-NN.

  - add oneliner function 'process_wide_format' for end-to-end
    processing to collapse multiple rows with same id, such as multiple
    entries for a gene.

  - fix NOTE due to Rcpp

  - fix memory reallocation problem

  - better exception handling

                 Changes in version 1.9.3 (2022-04-01)                  

  - Use RcppEigen

                 Changes in version 1.9.1 (2021-09-15)                  

  - Revise code (change order of header files) to support OpenMP in
    clang 13.0.0.

  - fix typo: medpolish to median_polish

                  Changes in version 1.9 (2020-06-27)                   

  - rchk: fix protection stack imbalance.

                  Changes in version 1.8 (2020-06-14)                   

  - Revise code to get rid of rchk complaints.

                  Changes in version 1.7 (2020-05-26)                   

  - Remove the R_ToplevelExec declaration to fix a compilation problem
    on Solaris.

                         Changes in version 1.6                         

  - Use _OPENMP to safeguard against MacOS lack of OpenMP support.

                  Changes in version 1.5 (2020-05-18)                   

  - Speedup with C++ implementation

                  Changes in version 1.4 (2020-04-26)                   

  - Add references.
  - Add size of pdf of QC.
  - Fix error of missing median m when pdf_out = NULL

                  Changes in version 1.3 (2020-01-07)                   

  - Filter out NaN values in the quantitative column in the function
    preprocess().

  - Update the median normalization step in the function preprocess().

                         Changes in version 1.2                         

  - Update the function preprocess().

                  Changes in version 1.0 (2019-11-15)                   

First release.