Pham TV, Tran CTM, Henneman AA, Pham LHC, Le DG, Can AH, Bui PHL, Piersma SR, Jimenez CR. Boosting the speed and accuracy of protein quantification algorithms in mass spectrometry-based proteomics. Journal of Proteome Research 2026 Feb 6; 25(2):1198–1203.

Pham TV, Henneman AA, Jimenez CR. iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics, Bioinformatics 2020 Apr 15;36(8):2611-2613.

Corresponding BibTeX entries:

  @Article{,
    title = {Boosting the speed and accuracy of protein quantification
      algorithms in mass spectrometry-based proteomics},
    author = {Pham TV and Tran CTM and Henneman AA and Pham LHC and {Le
      DG} and Can AH and Bui PHL and Piersma SR and Jimenez CR},
    journal = {Journal of Proteome Research},
    volume = {25},
    number = {2},
    pages = {1198-1203},
    year = {2026},
    url = {https://doi.org/10.1021/acs.jproteome.5c01038},
  }

  @Article{,
    title = {{iq}: an R package to estimate relative protein abundances
      from ion quantification in DIA-MS-based proteomics},
    author = {Pham TV and Henneman AA and Jimenez CR},
    journal = {Bioinformatics},
    volume = {36},
    number = {8},
    pages = {2611-2613},
    year = {2020},
    url = {https://doi.org/10.1093/bioinformatics/btz961},
  }