Fast MaxLFQ2 years ago
The standard pipeline | A faster MaxLFQ implementation | Benchmarking execution time | An efficient data structure and data loading | References
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Relative protein quantification for DIA-MS-based proteomics2 years ago
Introduction | Spectronaut output | An example dataset | Protein visualization | Extracting additional protein annotation | OpenSWATH output | Protein quantification | MaxQuant output | Read the protein group data | Building up a protein list from the MaxQuant evidence file | Other quantitation methods: topN, MeanInt, and median polish | References
The Beta-Binomial Test for Count Data5 years ago
Quick start | Unpaired test | Data normalization | Fold change calculation | Paired test | References
